Catherine Freitag Clarke, Ph.D.

Laboratory Address:
Young Hall 2107, 5073

Work Address:
Young Hall 5072B

Affiliations
Affiliations
Professor, Chemistry and Biochemistry, Biochemistry, Molecular Biology
Member, Graduate Program in Biochemistry, Molecular and Structural Biology, I3T Theme, Molecular Biology Institute
Researcher, Biochemistry, Chemical Biology, Proteomics and Bioinformatics
Research Interests
Coenzyme Q (also known as ubiquinone or Q) is a lipid component of cellular membranes that functions in cells as a redox-active coenzyme of both mitochondria and plasma membrane electron transport, as an essential lipid soluble antioxidant, and plays a role in apoptosis. We study the biosynthesis, regulation and function of Q in the yeast Saccharomyces cerevisiae. Our research takes advantage of a class of respiratory defective yeast mutants deficient in Q. We are characterizing the defects in these mutants by isolating and elucidating the structures of the Q biosynthetic intermediates and are characterizing both yeast and mammalian polypeptides required for Q biosynthesis. Our results suggest that yeast and higher eukaryotes share the same Q biosynthetic pathway, and that a large multi-subunit complex within the mitochondrial matrix is required for Q biosynthesis. Recently we have turned to the nematode Caenorhabditis elegans as an excellent model for genetic studies of the aging process. Gene mutations that increase life span have been identified in C. elegans that have homologs in vertebrates and appear to act by highly conserved mechanisms, and in pathways that parallel those present in humans. Mutations in the C. elegans clk-1 gene result in an extended life span, slowed development and sluggish behavior. Homology of clk-1 and COQ7 suggested that the long-lived C. elegans clk-1 mutants are defective in Q biosynthesis. Normally nematodes are provided a diet of Q-replete E. coli. In the absence of dietary Q, the clk-1 mutants display their true phenotype – growth arrest in early development and sterility when emerging from the dauer stage. These results suggest that clk-1 is essential for Q biosynthesis, and that the aging and developmental phenotypes previously described may be attributed to Q levels. Our recent studies indicate that both mean and maximum life span of wild-type nematodes fed Q-less diets is extended 60%. This life span extension is quite robust and is observed in all Age mutants tested so far, when transferred to the Q-less diet as adults. Our studies will define the metabolic alterations resulting from dietary Q, and will help determine how diet/environment and genotype interact to change longevity. Based on the strong conservation of Q function, our findings should be very relevant to aging in other organisms.
Biography

Professor Clarke has been a faculty member in the Department of Chemistry and Biochemistry since 1993. Dr. Clarke completed her undergraduate and graduate studies at UCLA. Her Ph.D. studies focused on the regulation of cholesterol metabolism. She was a post-doctoral fellow at Princeton University. She returned to UCLA in the Department of Medicine and studied polyisoprene and non-sterol metabolism, and then initiated studies on coenzyme Q biosynthesis using the yeast model. In 1993 she joined the Department of Chemistry and Biochemistry and the Molecular Biology Institute. She was promoted to full professor in 2002, and has served as General Chemistry Advisor and Biochemistry Graduate Student Advisor. The focus of her current research is determining how cells synthesize coenzyme Q, and utilizing yeast and nematode models to understand mechanisms of its inter- and intra-cellular transport, and elucidating functional roles.

Publications
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