A selected list of publications:
Escuin-Ordinas Helena, Li Shuoran, Xie Michael W, Sun Lu, Hugo Willy, Huang Rong Rong, Jiao Jing, de-Faria Felipe Meira, Realegeno Susan, Krystofinski Paige, Azhdam Ariel, Komenan Sara Marie D, Atefi Mohammad, Comin-Anduix Begoña, Pellegrini Matteo, Cochran Alistair J, Modlin Robert L, Herschman Harvey R, Lo Roger S, McBride William H, Segura Tatiana, Ribas Antoni
Cutaneous wound healing through paradoxical MAPK activation by BRAF
inhibitors
Nature communications,
2016; 7(8):
12348.
Brumm Andrew J, Nunez Stefanie, Doroudchi Mehdi M, Kawaguchi Riki, Duan Jinhzu, Pellegrini Matteo, Lam Larry, Carmichael S Thomas, Deb Arjun, Hinman Jason D
Astrocytes Can Adopt Endothelial Cell Fates in a p53-Dependent Manner
Molecular neurobiology,
2016; 7(8):
.
Schokrpur Shiruyeh, Hu Junhui, Moughon Diana L, Liu Peijun, Lin Lucia C, Hermann Kip, Mangul Serghei, Guan Wei, Pellegrini Matteo, Xu Hua, Wu Lily
CRISPR-Mediated VHL Knockout Generates an Improved Model for
Metastatic Renal Cell Carcinoma
Scientific reports,
2016; 6(1):
29032.
Hoban Megan D, Lumaquin Dianne, Kuo Caroline Y, Romero Zulema, Long Joseph, Ho Michelle, Young Courtney S, Mojadidi Michelle, Fitz-Gibbon Sorel, Cooper Aaron R, Lill Georgia R, Urbinati Fabrizia, Campo-Fernandez Beatriz, Bjurstrom Carmen F, Pellegrini Matteo, Hollis Roger P, Kohn Donald B
CRISPR/Cas9-mediated correction of the sickle mutation in human CD34+
cells
Molecular therapy : the journal of the American Society of Gene Therapy,
2016; 7(8):
.
Lam Larry, Chin Lydia, Halder Ramesh C, Sagong Bien, Famenini Sam, Sayre James, Montoya Dennis, Rubbi Liudmilla, Pellegrini Matteo, Fiala Milan
Epigenetic changes in T-cell and monocyte signatures and production of
neurotoxic cytokines in ALS patients
FASEB journal : official publication of the Federation of American Societies for Experimental Biology,
2016; 132(1):
.
Rocchi Anna, Milioto Carmelo, Parodi Sara, Armirotti Andrea, Borgia Doriana, Pellegrini Matteo, Urciuolo Anna, Molon Sibilla, Morbidoni Valeria, Marabita Manuela, Romanello Vanina, Gatto Pamela, Blaauw Bert, Bonaldo Paolo, Sambataro Fabio, Robins Diane M, Lieberman Andrew P, Sorarù Gianni, Vergani Lodovica, Sandri Marco, Pennuto Maria
Glycolytic-to-oxidative fiber-type switch and mTOR signaling
activation are early-onset features of SBMA muscle modified by
high-fat diet
Acta neuropathologica,
2016; 132(1):
127-44.
Steiger Julia, Stephan Alexander, Inkeles Megan S, Realegeno Susan, Bruns Heiko, Kröll Philipp, de Castro Kroner Juliana, Sommer Andrea, Batinica Marina, Pitzler Lena, Kalscheuer Rainer, Hartmann Pia, Plum Georg, Stenger Steffen, Pellegrini Matteo, Brachvogel Bent, Modlin Robert L, Fabri Mario
Imatinib Triggers Phagolysosome Acidification and Antimicrobial
Activity against Mycobacterium bovis Bacille Calmette-Guérin in
Glucocorticoid-Treated Human Macrophages
Journal of immunology (Baltimore, Md. : 1950),
2016; 197(1):
222-32.
Realegeno Susan, Kelly-Scumpia Kindra M, Dang Angeline Tilly, Lu Jing, Teles Rosane, Liu Philip T, Schenk Mirjam, Lee Ernest Y, Schmidt Nathan W, Wong Gerard C L, Sarno Euzenir N, Rea Thomas H, Ochoa Maria T, Pellegrini Matteo, Modlin Robert L
S100A12 Is Part of the Antimicrobial Network against Mycobacterium
leprae in Human Macrophages
PLoS pathogens,
2016; 12(6):
e1005705.
Zhang Hanwei, Prado Kris, Zhang Kelvin X, Peek Elizabeth M, Lee Jane, Wang Xiaoyan, Huang Jiaoti, Li Gang, Pellegrini Matteo, Chin Arnold I
Biased Expression of the FOXP3Î3 Isoform in Aggressive Bladder Cancer
Mediates Differentiation and Cisplatin Chemotherapy Resistance
Clinical cancer research : an official journal of the American Association for Cancer Research,
2016; 12(6):
.
Flinders Colin, Lam Larry, Rubbi Liudmilla, Ferrari Roberto, Fitz-Gibbon Sorel, Chen Pao-Yang, Thompson Michael, Christofk Heather, B Agus David, Ruderman Daniel, Mallick Parag, Pellegrini Matteo
Epigenetic changes mediated by polycomb repressive complex 2 and E2a
are associated with drug resistance in a mouse model of lymphoma
Genome medicine,
2016; 8(1):
54.
Chin Chee Jia, Cooper Aaron R, Lill Georgia R, Evseenko Denis, Zhu Yuhua, He Chong Bin, Casero David, Pellegrini Matteo, Kohn Donald B, Crooks Gay M
Genetic Tagging During Human Mesoderm Differentiation Reveals
Tripotent Lateral Plate Mesodermal Progenitors
Stem cells (Dayton, Ohio),
2016; 34(5):
1239-50.
Meng Qingying, Ying Zhe, Noble Emily, Zhao Yuqi, Agrawal Rahul, Mikhail Andrew, Zhuang Yumei, Tyagi Ethika, Zhang Qing, Lee Jae-Hyung, Morselli Marco, Orozco Luz, Guo Weilong, Kilts Tina M, Zhu Jun, Zhang Bin, Pellegrini Matteo, Xiao Xinshu, Young Marian F, Gomez-Pinilla Fernando, Yang Xia
Systems Nutrigenomics Reveals Brain Gene Networks Linking Metabolic
and Brain Disorders
EBioMedicine,
2016; 7(1):
157-66.
Sack Lawren, Ball Marilyn C, Brodersen Craig, Davis Stephen D, Des Marais David L, Donovan Lisa A, Givnish Thomas J, Hacke Uwe G, Huxman Travis, Jansen Steven, Jacobsen Anna L, Johnson Daniel M, Koch George W, Maurel Christophe, McCulloh Katherine A, McDowell Nate G, McElrone Andrew, Meinzer Frederick C, Melcher Peter J, North Gretchen, Pellegrini Matteo, Pockman William T, Pratt R Brandon, Sala Anna, Santiago Louis S, Savage Jessica A, Scoffoni Christine, Sevanto Sanna, Sperry John, Tyerman Stephen D, Way Danielle, Holbrook N Michele
Plant hydraulics as a central hub integrating plant and ecosystem
function: meeting report for 'Emerging Frontiers in Plant Hydraulics'
(Washington, DC, May 2015)
Plant, cell & environment,
2016; 34(5):
.
Janowitz Koch Ilana, Clark Michelle M, Thompson Michael J, Deere-Machemer Kerry A, Wang Jun, Duarte Lionel, Gnanadesikan Gitanjali E, McCoy Eskender L, Rubbi Liudmilla, Stahler Daniel R, Pellegrini Matteo, Ostrander Elaine A, Wayne Robert K, Sinsheimer Janet S, vonHoldt Bridgett M
The concerted impact of domestication and transposon insertions on
methylation patterns between dogs and grey wolves
Molecular ecology,
2016; 25(8):
1838-55.
Chen Haodong, Orozco Luz D, Wang Jessica, Rau Christoph D, Rubbi Liudmilla, Ren Shuxun, Wang Yibin, Pellegrini Matteo, Lusis Aldons J, Vondriska Thomas M
DNA Methylation Indicates Susceptibility to Isoproterenol-Induced
Cardiac Pathology and Is Associated With Chromatin States
Circulation research,
2016; 118(5):
786-97.
Soragni Alice, Janzen Deanna M, Johnson Lisa M, Lindgren Anne G, Thai-Quynh Nguyen Anh, Tiourin Ekaterina, Soriaga Angela B, Lu Jing, Jiang Lin, Faull Kym F, Pellegrini Matteo, Memarzadeh Sanaz, Eisenberg David S
A Designed Inhibitor of p53 Aggregation Rescues p53 Tumor Suppression
in Ovarian Carcinomas
Cancer cell,
2016; 29(1):
90-103.
Lopez David, Hamaji Takashi, Kropat Janette, De Hoff Peter, Morselli Marco, Rubbi Liudmilla, Fitz-Gibbon Sorel, Gallaher Sean D, Merchant Sabeeha S, Umen James, Pellegrini Matteo
Dynamic Changes in the Transcriptome and Methylome of Chlamydomonas
reinhardtii throughout Its Life Cycle
Plant physiology,
2015; 169(4):
2730-43.
Clark Rebecca I, Salazar Anna, Yamada Ryuichi, Fitz-Gibbon Sorel, Morselli Marco, Alcaraz Jeanette, Rana Anil, Rera Michael, Pellegrini Matteo, Ja William W, Walker David W
Distinct Shifts in Microbiota Composition during Drosophila Aging
Impair Intestinal Function and Drive Mortality
Cell reports,
2015; 12(10):
1656-67.
Sabbatucci Michela, Covino Daniela Angela, Purificato Cristina, Mallano Alessandra, Federico Maurizio, Lu Jing, Rinaldi Arturo Ottavio, Pellegrini Matteo, Bona Roberta, Michelini Zuleika, Cara Andrea, Vella Stefano, Gessani Sandra, Andreotti Mauro, Fantuzzi Laura
Erratum to: Endogenous CCL2 neutralization restricts HIV-1 replication
in primary human macrophages by inhibiting viral DNA accumulation
Retrovirology,
2015; 12(4):
47.
Orozco Luz D, Morselli Marco, Rubbi Liudmilla, Guo Weilong, Go James, Shi Huwenbo, Lopez David, Furlotte Nicholas A, Bennett Brian J, Farber Charles R, Ghazalpour Anatole, Zhang Michael Q, Bahous Renata, Rozen Rima, Lusis Aldons J, Pellegrini Matteo
Epigenome-wide association of liver methylation patterns and complex
metabolic traits in mice
Cell metabolism,
2015; 21(6):
905-17.
Morselli Marco, Pastor William A, Montanini Barbara, Nee Kevin, Ferrari Roberto, Fu Kai, Bonora Giancarlo, Rubbi Liudmilla, Clark Amander T, Ottonello Simone, Jacobsen Steven E, Pellegrini Matteo
In vivo targeting of de novo DNA methylation by histone modifications
in yeast and mouse
eLife,
2015; 4(3):
e06205.
Lam Larry, Halder Ramesh C, Montoya Dennis J, Rubbi Liudmilla, Rinaldi Arturo, Sagong Bien, Weitzman Sarah, Rubattino Rachel, Singh Ram Raj, Pellegrini Matteo, Fiala Milan
Anti-inflammatory therapies of amyotrophic lateral sclerosis guided by
immune pathways
American journal of neurodegenerative disease,
2015; 4(2):
28-39.
Sabbatucci Michela, Covino Daniela Angela, Purificato Cristina, Mallano Alessandra, Federico Maurizio, Lu Jing, Rinaldi Arturo Ottavio, Pellegrini Matteo, Bona Roberta, Michelini Zuleika, Cara Andrea, Vella Stefano, Gessani Sandra, Andreotti Mauro, Fantuzzi Laura
Endogenous CCL2 neutralization restricts HIV-1 replication in primary
human macrophages by inhibiting viral DNA accumulation
Retrovirology,
2015; 12(6):
4.
Org Tõnis, Duan Dan, Ferrari Roberto, Montel-Hagen Amelie, Van Handel Ben, Kerényi Marc A, Sasidharan Rajkumar, Rubbi Liudmilla, Fujiwara Yuko, Pellegrini Matteo, Orkin Stuart H, Kurdistani Siavash K, Mikkola Hanna Ka
Scl binds to primed enhancers in mesoderm to regulate hematopoietic
and cardiac fate divergence
The EMBO journal,
2015; 34(6):
759-77.
Inkeles Megan S, Scumpia Philip O, Swindell William R, Lopez David, Teles Rosane M B, Graeber Thomas G, Meller Stephan, Homey Bernhard, Elder James T, Gilliet Michel, Modlin Robert L, Pellegrini Matteo
Comparison of molecular signatures from multiple skin diseases
identifies mechanisms of immunopathogenesis
The Journal of investigative dermatology,
2015; 135(1):
151-9.
Briot Anaïs, Jaroszewicz Artur, Warren Carmen M, Lu Jing, Touma Marlin, Rudat Carsten, Hofmann Jennifer J, Airik Rannar, Weinmaster Gerry, Lyons Karen, Wang Yibin, Kispert Andreas, Pellegrini Matteo, Iruela-Arispe M Luisa
Repression of Sox9 by Jag1 is continuously required to suppress the
default chondrogenic fate of vascular smooth muscle cells
Developmental cell,
2014; 31(6):
707-21.
Huang Kevin, Wu Zhourui, Liu Zhenshan, Hu Ganlu, Yu Juehua, Chang Kai H, Kim Kee-Pyo, Le Thuc, Faull Kym F, Rao Nagesh, Gennery Andrew, Xue Zhigang, Wang Cun-Yu, Pellegrini Matteo, Fan Guoping
Selective demethylation and altered gene expression are associated
with ICF syndrome in human-induced pluripotent stem cells and
mesenchymal stem cells
Human molecular genetics,
2014; 23(24):
6448-57.
Ferrari Roberto, Gou Dawei, Jawdekar Gauri, Johnson Sarah A, Nava Miguel, Su Trent, Yousef Ahmed F, Zemke Nathan R, Pellegrini Matteo, Kurdistani Siavash K, Berk Arnold J
Adenovirus small E1A employs the lysine acetylases p300/CBP and tumor
suppressor Rb to repress select host genes and promote productive
virus infection
Cell host & microbe,
2014; 16(5):
663-76.
Montoya Dennis, Inkeles Megan S, Liu Phillip T, Realegeno Susan, Teles Rosane M B, Vaidya Poorva, Munoz Marcos A, Schenk Mirjam, Swindell William R, Chun Rene, Zavala Kathryn, Hewison Martin, Adams John S, Horvath Steve, Pellegrini Matteo, Bloom Barry R, Modlin Robert L
IL-32 is a molecular marker of a host defense network in human
tuberculosis
Science translational medicine,
2014; 6(250):
250ra114.
Ramundo Silvia, Casero David, Mühlhaus Timo, Hemme Dorothea, Sommer Frederik, Crèvecoeur Michèle, Rahire Michèle, Schroda Michael, Rusch Jannette, Goodenough Ursula, Pellegrini Matteo, Perez-Perez Maria Esther, Crespo José Luis, Schaad Olivier, Civic Natacha, Rochaix Jean David
Conditional Depletion of the Chlamydomonas Chloroplast ClpP Protease
Activates Nuclear Genes Involved in Autophagy and Plastid Protein
Quality Control
The Plant cell,
2014; 26(5):
2201-2222.
Ooi Aik T, Gower Adam C, Zhang Kelvin X, Vick Jessica L, Hong Longsheng, Nagao Brian, Wallace W Dean, Elashoff David A, Walser Tonya C, Dubinett Steven M, Pellegrini Matteo, Lenburg Marc E, Spira Avrum, Gomperts Brigitte N
Molecular profiling of premalignant lesions in lung squamous cell
carcinomas identifies mechanisms involved in stepwise carcinogenesis
Cancer prevention research (Philadelphia, Pa.),
2014; 7(5):
487-95.
Goodenough Ursula, Blaby Ian, Casero David, Gallaher Sean D, Goodson Carrie, Johnson Shannon, Lee Jae-Hyeok, Merchant Sabeeha S, Pellegrini Matteo, Roth Robyn, Rusch Jannette, Singh Manmilan, Umen James G, Weiss Taylor L, Wulan Tuya
The path to triacylglyceride obesity in the sta6 strain of
Chlamydomonas reinhardtii
Eukaryotic cell,
2014; 13(5):
591-613.
Schmollinger Stefan, Mühlhaus Timo, Boyle Nanette R, Blaby Ian K, Casero David, Mettler Tabea, Moseley Jeffrey L, Kropat Janette, Sommer Frederik, Strenkert Daniela, Hemme Dorothea, Pellegrini Matteo, Grossman Arthur R, Stitt Mark, Schroda Michael, Merchant Sabeeha S
Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome,
the Proteome, and Photosynthetic Metabolism
The Plant cell,
2014; 26(4):
1410-1435.
Li Yun, Chen Jason A, Sears Renee L, Gao Fuying, Klein Eric D, Karydas Anna, Geschwind Michael D, Rosen Howard J, Boxer Adam L, Guo Weilong, Pellegrini Matteo, Horvath Steve, Miller Bruce L, Geschwind Daniel H, Coppola Giovanni
An epigenetic signature in peripheral blood associated with the
haplotype on 17q21.31, a risk factor for neurodegenerative tauopathy
PLoS genetics,
2014; 10(3):
e1004211.
Johnson Lianna M, Du Jiamu, Hale Christopher J, Bischof Sylvain, Feng Suhua, Chodavarapu Ramakrishna K, Zhong Xuehua, Marson Giuseppe, Pellegrini Matteo, Segal David J, Patel Dinshaw J, Jacobsen Steven E
SRA- and SET-domain-containing proteins link RNA polymerase V
occupancy to DNA methylation
Nature,
2014; 507(7490):
124-8.
Huang Kevin, Shen Yin, Xue Zhigang, Bibikova Marina, April Craig, Liu Zhenshan, Cheng Linzhao, Nagy Andras, Pellegrini Matteo, Fan Jian-Bing, Fan Guoping
A panel of CpG methylation sites distinguishes human embryonic stem
cells and induced pluripotent stem cells
Stem cell reports,
2014; 2(1):
36-43.
Lei Nan Ye, Jabaji Ziyad, Wang Jiafang, Joshi Vaidehi S, Brinkley Garrett J, Khalil Hassan, Wang Fengchao, Jaroszewicz Artur, Pellegrini Matteo, Li Linheng, Lewis Michael, Stelzner Matthias, Dunn James C Y, MartÃn MartÃn G
Intestinal subepithelial myofibroblasts support the growth of
intestinal epithelial stem cells
PloS one,
2014; 9(1):
e84651.
Ghahramani Negar M, Ngun Tuck C, Chen Pao-Yang, Tian Yuan, Krishnan Sangitha, Muir Stephanie, Rubbi Liudmilla, Arnold Arthur P, de Vries Geert J, Forger Nancy G, Pellegrini Matteo, Vilain Eric
The effects of perinatal testosterone exposure on the DNA methylome of
the mouse brain are late-emerging
Biology of sex differences,
2014; 5(1):
8.
Blaby Ian K, Glaesener Anne G, Mettler Tabea, Fitz-Gibbon Sorel T, Gallaher Sean D, Liu Bensheng, Boyle Nanette R, Kropat Janette, Stitt Mark, Johnson Shannon, Benning Christoph, Pellegrini Matteo, Casero David, Merchant Sabeeha S
Systems-level analysis of nitrogen starvation-induced modifications of
carbon metabolism in a Chlamydomonas reinhardtii starchless mutant
The Plant cell,
2013; 25(11):
4305-23.
Urzica Eugen I, Vieler Astrid, Hong-Hermesdorf Anne, Page M Dudley, Casero David, Gallaher Sean D, Kropat Janette, Pellegrini Matteo, Benning Christoph, Merchant Sabeeha S
Remodeling of membrane lipids in iron-starved Chlamydomonas
The Journal of biological chemistry,
2013; 288(42):
30246-58.
Chen Pao-Yang, Ganguly Amit, Rubbi Liudmilla, Orozco Luz D, Morselli Marco, Ashraf Davin, Jaroszewicz Artur, Feng Suhua, Jacobsen Steve E, Nakano Atsushi, Devaskar Sherin U, Pellegrini Matteo
Intrauterine calorie restriction affects placental DNA methylation and
gene expression
Physiological genomics,
2013; 45(14):
565-76.
Sridharan Rupa, Gonzales-Cope Michelle, Chronis Constantinos, Bonora Giancarlo, McKee Robin, Huang Chengyang, Patel Sanjeet, Lopez David, Mishra Nilamadhab, Pellegrini Matteo, Carey Michael, Garcia Benjamin A, Plath Kathrin
Proteomic and genomic approaches reveal critical functions of H3K9
methylation and heterochromatin protein-1γ in reprogramming to
pluripotency
Nature cell biology,
2013; 15(7):
872-82.
Varshney Gaurav K, Lu Jing, Gildea Derek E, Huang Haigen, Pei Wuhong, Yang Zhongan, Huang Sunny C, Schoenfeld David, Pho Nam H, Casero David, Hirase Takashi, Mosbrook-Davis Deborah, Zhang Suiyuan, Jao Li-En, Zhang Bo, Woods Ian G, Zimmerman Steven, Schier Alexander F, Wolfsberg Tyra G, Pellegrini Matteo, Burgess Shawn M, Lin Shuo
A large-scale zebrafish gene knockout resource for the genome-wide
study of gene function
Genome research,
2013; 23(4):
727-35.
Janzen Deanna M, Cheng Donghui, Schafenacker Amanda M, Paik Daniel Y, Goldstein Andrew S, Witte Owen N, Jaroszewicz Artur, Pellegrini Matteo, Memarzadeh Sanaz
Estrogen and progesterone together expand murine endometrial
epithelial progenitor cells
Stem cells (Dayton, Ohio),
2013; 31(4):
808-22.
Vincent John J, Huang Yun, Chen Pao-Yang, Feng Suhua, Calvopiña Joseph H, Nee Kevin, Lee Serena A, Le Thuc, Yoon Alexander J, Faull Kym, Fan Guoping, Rao Anjana, Jacobsen Steven E, Pellegrini Matteo, Clark Amander T
Stage-specific roles for tet1 and tet2 in DNA demethylation in
primordial germ cells
Cell stem cell,
2013; 12(4):
470-8.
Daniels-Wells Tracy R, Helguera Gustavo, RodrÃguez José A, Leoh Lai Sum, Erb Michael A, Diamante Graciel, Casero David, Pellegrini Matteo, MartÃnez-Maza Otoniel, Penichet Manuel L
Insights into the mechanism of cell death induced by saporin delivered
into cancer cells by an antibody fusion protein targeting the
transferrin receptor 1
Toxicology in vitro : an international journal published in association with BIBRA,
2013; 27(1):
220-31.
Palanca Ana Marie S, Lee Sung-Ling, Yee Laura E, Joe-Wong Carlee, Trinh Le A, Hiroyasu Elizabeth, Husain Majid, Fraser Scott E, Pellegrini Matteo, Sagasti Alvaro
New transgenic reporters identify somatosensory neuron subtypes in
larval zebrafish
Developmental neurobiology,
2013; 73(2):
152-67.
Duanmu Deqiang, Casero David, Dent Rachel M, Gallaher Sean, Yang Wenqiang, Rockwell Nathan C, Martin Shelley S, Pellegrini Matteo, Niyogi Krishna K, Merchant Sabeeha S, Grossman Arthur R, Lagarias J Clark
Retrograde bilin signaling enables Chlamydomonas greening and
phototrophic survival
Proceedings of the National Academy of Sciences of the United States of America,
2013; 110(9):
3621-6.
Hsieh Scott I, Castruita Madeli, Malasarn Davin, Urzica Eugen, Erde Jonathan, Page M Dudley, Yamasaki Hiroaki, Casero David, Pellegrini Matteo, Merchant Sabeeha S, Loo Joseph A
The proteome of copper, iron, zinc, and manganese micronutrient
deficiency in Chlamydomonas reinhardtii
Molecular & cellular proteomics : MCP,
2013; 12(1):
65-86.
Slavov Gancho T, DiFazio Stephen P, Martin Joel, Schackwitz Wendy, Muchero Wellington, Rodgers-Melnick Eli, Lipphardt Mindie F, Pennacchio Christa P, Hellsten Uffe, Pennacchio Len A, Gunter Lee E, Ranjan Priya, Vining Kelly, Pomraning Kyle R, Wilhelm Larry J, Pellegrini Matteo, Mockler Todd C, Freitag Michael, Geraldes Armando, El-Kassaby Yousry A, Mansfield Shawn D, Cronk Quentin C B, Douglas Carl J, Strauss Steven H, Rokhsar Dan, Tuskan Gerald A
Genome resequencing reveals multiscale geographic structure and
extensive linkage disequilibrium in the forest tree Populus
trichocarpa
The New phytologist,
2012; 196(3):
713-25.
Ghazalpour Anatole, Rau Christoph D, Farber Charles R, Bennett Brian J, Orozco Luz D, van Nas Atila, Pan Calvin, Allayee Hooman, Beaven Simon W, Civelek Mete, Davis Richard C, Drake Thomas A, Friedman Rick A, Furlotte Nick, Hui Simon T, Jentsch J David, Kostem Emrah, Kang Hyun Min, Kang Eun Yong, Joo Jong Wha, Korshunov Vyacheslav A, Laughlin Rick E, Martin Lisa J, Ohmen Jeffrey D, Parks Brian W, Pellegrini Matteo, Reue Karen, Smith Desmond J, Tetradis Sotirios, Wang Jessica, Wang Yibin, Weiss James N, Kirchgessner Todd, Gargalovic Peter S, Eskin Eleazar, Lusis Aldons J, LeBoeuf Renée C
Hybrid mouse diversity panel: a panel of inbred mouse strains suitable
for analysis of complex genetic traits
Mammalian genome : official journal of the International Mammalian Genome Society,
2012; 23(9-10):
680-92.
Marinelli Laura J, Fitz-Gibbon Sorel, Hayes Clarmyra, Bowman Charles, Inkeles Megan, Loncaric Anya, Russell Daniel A, Jacobs-Sera Deborah, Cokus Shawn, Pellegrini Matteo, Kim Jenny, Miller Jeff F, Hatfull Graham F, Modlin Robert L
Propionibacterium acnes bacteriophages display limited genetic
diversity and broad killing activity against bacterial skin isolates
mBio,
2012; 3(5):
.
Urzica Eugen I, Casero David, Yamasaki Hiroaki, Hsieh Scott I, Adler Lital N, Karpowicz Steven J, Blaby-Haas Crysten E, Clarke Steven G, Loo Joseph A, Pellegrini Matteo, Merchant Sabeeha S
Systems and trans-system level analysis identifies conserved iron
deficiency responses in the plant lineage
The Plant cell,
2012; 24(10):
3921-48.
Orozco Luz D, Bennett Brian J, Farber Charles R, Ghazalpour Anatole, Pan Calvin, Che Nam, Wen Pingzi, Qi Hong Xiu, Mutukulu Adonisa, Siemers Nathan, Neuhaus Isaac, Yordanova Roumyana, Gargalovic Peter, Pellegrini Matteo, Kirchgessner Todd, Lusis Aldons J
Unraveling inflammatory responses using systems genetics and
gene-environment interactions in macrophages
Cell,
2012; 151(3):
658-70.
Van Handel Ben, Montel-Hagen Amélie, Sasidharan Rajkumar, Nakano Haruko, Ferrari Roberto, Boogerd Cornelis J, Schredelseker Johann, Wang Yanling, Hunter Sean, Org Tõnis, Zhou Jian, Li Xinmin, Pellegrini Matteo, Chen Jau-Nian, Orkin Stuart H, Kurdistani Siavash K, Evans Sylvia M, Nakano Atsushi, Mikkola Hanna K A
Scl represses cardiomyogenesis in prospective hemogenic endothelium
and endocardium
Cell,
2012; 150(3):
590-605.
Ferrari Roberto, Su Trent, Li Bing, Bonora Giancarlo, Oberai Amit, Chan Yvonne, Sasidharan Rajkumar, Berk Arnold J, Pellegrini Matteo, Kurdistani Siavash K
Reorganization of the host epigenome by a viral oncogene
Genome research,
2012; 22(7):
1212-21.
Chodavarapu Ramakrishna K, Feng Suhua, Ding Bo, Simon Stacey A, Lopez David, Jia Yulin, Wang Guo-Liang, Meyers Blake C, Jacobsen Steven E, Pellegrini Matteo
Transcriptome and methylome interactions in rice hybrids
Proceedings of the National Academy of Sciences of the United States of America,
2012; 109(30):
12040-5.
Greenberg MV, Ausin I, Chan SW, Cokus SJ, Cuperus JT, Feng S, Law JA, Chu C, Pellegrini M, Carrington JC, Jacobsen SE
Identification of genes required for de novo DNA methylation in Arabidopsis
Epigenetics,
2011; 6(3):
.
Mara H. Sherman, Ali I. Kuraishy, Chetan Deshpande, Jason S. Hong, Nicholas A. Cacalano, Richard A. Gatti, John P. Manis, Michael A. Damore, Matteo Pellegrini, Michael A. Teitell
AID-Induced Genotoxic Stress Promotes B Cell Differentiation in the Germinal Center via ATM and LKB1 Signaling
Molecular Cell,
2010; 39(6):
873-885.
Feng S, Cokus SJ, Zhang X, Chen PY, Bostick M, Goll MG, Hetzel J, Jain J, Strauss SH, Halpern ME, Ukomadu C, Sadler KC, Pradhan S, Pellegrini M, Jacobsen SE.
Conservation and divergence of methylation patterning in plants and animals
Proc Natl Acad Sci U S A,
2010; 107(19):
8689-94.
Ferris P, Olson BJ, De Hoff PL, Douglass S, Casero D, Prochnik S, Geng S, Rai R, Grimwood J, Schmutz J, Nishii I, Hamaji T, Nozaki H, Pellegrini M, Umen JG
Evolution of an expanded sex-determining locus in Volvox
Science,
2010; 328(5976):
351-4.
Chodavarapu RK, Feng S, Bernatavichute YV, Chen PY, Stroud H, Yu Y, Hetzel JA, Kuo F, Kim J, Cokus SJ, Casero D, Bernal M, Huijser P, Clark AT, Krämer U, Merchant SS, Zhang X, Jacobsen SE, Pellegrini M
Relationship between nucleosome positioning and DNA methylation
Nature,
2010; 466(7304):
388-92.
Orozco LD, Cokus SJ, Ghazalpour A, Ingram-Drake L, Wang S, van Nas A, Che N, Araujo JA, Pellegrini M, Lusis AJ
Copy number variation influences gene expression and metabolic traits in mice
Hum Mol Genet,
2009; 18(21):
4118-29.
Jacob Y, Feng S, Leblanc CA, Bernatavichute YV, Stroud H, Cokus S, Johnson LM, Pellegrini M, Jacobsen SE, Michaels SD.
ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing
Nature Structural & Molecular Biology ,
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