A selected list of publications:
Spirig Thomas, Malmirchegini G Reza, Zhang Jiang, Robson Scott A, Sjodt Megan, Liu Mengyao, Krishna Kumar Kaavya, Dickson Claire F, Gell David A, Lei Benfang, Loo Joseph A, Clubb Robert T
Staphylococcus aureus uses a novel multidomain receptor to break apart
human hemoglobin and steal its heme
The Journal of biological chemistry,
2013; 288(2):
1065-78.
Hsieh Scott I, Castruita Madeli, Malasarn Davin, Urzica Eugen, Erde Jonathan, Page M Dudley, Yamasaki Hiroaki, Casero David, Pellegrini Matteo, Merchant Sabeeha S, Loo Joseph A
The proteome of copper, iron, zinc, and manganese micronutrient
deficiency in Chlamydomonas reinhardtii
Molecular & cellular proteomics : MCP,
2013; 12(1):
65-86.
Prabhudesai Shubhangi, Sinha Sharmistha, Attar Aida, Kotagiri Aswani, Fitzmaurice Arthur G, Lakshmanan Rajeswari, Lakshmanan Ravi, Ivanova Magdalena I, Loo Joseph A, Klärner Frank-Gerrit, Schrader Thomas, Stahl Mark, Bitan Gal, Bronstein Jeff M
A novel "molecular tweezer" inhibitor of α-synuclein neurotoxicity in
vitro and in vivo
Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics,
2012; 9(2):
464-76.
Shirasaki Dyna I, Greiner Erin R, Al-Ramahi Ismael, Gray Michelle, Boontheung Pinmanee, Geschwind Daniel H, Botas Juan, Coppola Giovanni, Horvath Steve, Loo Joseph A, Yang X William
Network organization of the huntingtin proteomic interactome in
mammalian brain
Neuron,
2012; 75(1):
41-57.
Urzica Eugen I, Casero David, Yamasaki Hiroaki, Hsieh Scott I, Adler Lital N, Karpowicz Steven J, Blaby-Haas Crysten E, Clarke Steven G, Loo Joseph A, Pellegrini Matteo, Merchant Sabeeha S
Systems and trans-system level analysis identifies conserved iron
deficiency responses in the plant lineage
The Plant cell,
2012; 24(10):
3921-48.
Sinha Sharmistha, Lopes Dahabada H J, Du Zhenming, Pang Eric S, Shanmugam Akila, Lomakin Aleksey, Talbiersky Peter, Tennstaedt Annette, McDaniel Kirsten, Bakshi Reena, Kuo Pei-Yi, Ehrmann Michael, Benedek George B, Loo Joseph A, Klärner Frank-Gerrit, Schrader Thomas, Wang Chunyu, Bitan Gal
Lysine-specific molecular tweezers are broad-spectrum inhibitors of
assembly and toxicity of amyloid proteins
Journal of the American Chemical Society,
2011; 133(42):
16958-69.
Castruita Madeli, Casero David, Karpowicz Steven J, Kropat Janette, Vieler Astrid, Hsieh Scott I, Yan Weihong, Cokus Shawn, Loo Joseph A, Benning Christoph, Pellegrini Matteo, Merchant Sabeeha S
Systems biology approach in Chlamydomonas reveals connections between
copper nutrition and multiple metabolic steps
The Plant cell,
2011; 23(4):
1273-92.
Grintsevich Elena E, Galkin Vitold E, Orlova Albina, Ytterberg A Jimmy, Mikati Mouna M, Kudryashov Dmitri S, Loo Joseph A, Egelman Edward H, Reisler Emil
Mapping of drebrin binding site on F-actin
Journal of molecular biology,
2010; 398(4):
542-54.
Thevis Mario, Thomas Andreas, Kohler Maxie, Beuck Simon, Möller Ines, Schäfer Mathias, Rodchenkov Grigory, Yin Sheng, Loo Joseph A, Geyer Hans, Schänzer Wilhelm
Mass spectrometry-based characterization of new drugs and methods of
performance manipulation in doping control analysis
European journal of mass spectrometry (Chichester, England),
2010; 16(3):
301-12.
Lu Qing-Yi, Yang Yanan, Jin Yu Sheng, Zhang Zuo-Feng, Heber David, Li Frederick P, Dubinett Steven M, Sondej Melissa A, Loo Joseph A, Rao Jian Yu
Effects of green tea extract on lung cancer A549 cells: proteomic
identification of proteins associated with cell migration
Proteomics,
2009; 9(3):
757-67.
Lu Kan V, Zhu Shaojun, Cvrljevic Anna, Huang Tiffany T, Sarkaria Shawn, Ahkavan David, Dang Julie, Dinca Eduard B, Plaisier Seema B, Oderberg Isaac, Lee Yohan, Chen Zugen, Caldwell Jeremy S, Xie Yongmin, Loo Joseph A, Seligson David, Chakravari Arnab, Lee Francis Y, Weinmann Roberto, Cloughesy Timothy F, Nelson Stanley F, Bergers Gabriele, Graeber Thomas, Furnari Frank B, James C David, Cavenee Webster K, Johns Terrance G, Mischel Paul S
Fyn and SRC are effectors of oncogenic epidermal growth factor
receptor signaling in glioblastoma patients
Cancer research,
2009; 69(17):
6889-98.
Sondej Melissa, Denny Patricia A, Xie Yongming, Ramachandran Prasanna, Si Yan, Takashima Jona, Shi Wenyuan, Wong David T, Loo Joseph A, Denny Paul C
Glycoprofiling of the Human Salivary Proteome
Clinical proteomics,
2009; 5(1):
52-68.
Zhang Zhiwen, Gildersleeve Jeff, Yang Yu-Ying, Xu Ran, Loo Joseph A, Uryu Sean, Wong Chi-Huey, Schultz Peter G
Retraction
Science (New York, N.Y.),
2009; 326(5957):
1187.
Francoleon Deborah R, Boontheung Pinmanee, Yang Yanan, Kin UnMi, Ytterberg A Jimmy, Denny Patricia A, Denny Paul C, Loo Joseph A, Gunsalus Robert P, Loo Rachel R Ogorzalek
S-layer, surface-accessible, and concanavalin A binding proteins of
Methanosarcina acetivorans and Methanosarcina mazei
Journal of proteome research,
2009; 8(4):
1972-82.
Yan Weihong, Apweiler Rolf, Balgley Brian M, Boontheung Pinmanee, Bundy Jonathan L, Cargile Benjamin J, Cole Steve, Fang Xueping, Gonzalez-Begne Mireya, Griffin Timothy J, Hagen Fred, Hu Shen, Wolinsky Lawrence E, Lee Cheng S, Malamud Daniel, Melvin James E, Menon Rajasree, Mueller Michael, Qiao Renli, Rhodus Nelson L, Sevinsky Joel R, States David, Stephenson James L, Than Shawn, Yates John R, Yu Weixia, Xie Hongwei, Xie Yongming, Omenn Gilbert S, Loo Joseph A, Wong David T
Systematic comparison of the human saliva and plasma proteomes
Proteomics. Clinical applications,
2009; 3(1):
116-134.
Lomenick Brett, Hao Rui, Jonai Nao, Chin Randall M, Aghajan Mariam, Warburton Sarah, Wang Jianing, Wu Raymond P, Gomez Fernando, Loo Joseph A, Wohlschlegel James A, Vondriska Thomas M, Pelletier Jerry, Herschman Harvey R, Clardy Jon, Clarke Catherine F, Huang Jing
Target identification using drug affinity responsive target stability
(DARTS)
Proceedings of the National Academy of Sciences of the United States of America,
2009; 106(51):
21984-9.
Gonzalez Oscar, Fontanes Vanessa, Raychaudhuri Santanu, Loo Rachel, Loo Joseph, Arumugaswami Vaithilingaraja, Sun Ren, Dasgupta Asim, French Samuel W
The heat shock protein inhibitor Quercetin attenuates hepatitis C
virus production
Hepatology (Baltimore, Md.),
2009; 50(6):
1756-64.
Kudryashov Dmitri S, Durer Zeynep A Oztug, Ytterberg A Jimmy, Sawaya Michael R, Pashkov Inna, Prochazkova Katerina, Yeates Todd O, Loo Rachel R Ogorzalek, Loo Joseph A, Satchell Karla J Fullner, Reisler Emil
Connecting actin monomers by iso-peptide bond is a toxicity mechanism
of the Vibrio cholerae MARTX toxin
Proceedings of the National Academy of Sciences of the United States of America,
2008; 105(47):
18537-42.
Grintsevich Elena E, Benchaar Sabrina A, Warshaviak Dora, Boontheung Pinmanee, Halgand Frédéric, Whitelegge Julian P, Faull Kym F, Loo Rachel R Ogorzalek, Sept David, Loo Joseph A, Reisler Emil
Mapping the cofilin binding site on yeast G-actin by chemical
cross-linking
Journal of molecular biology,
2008; 377(2):
395-409.
Hu Shen, Arellano Martha, Boontheung Pinmanee, Wang Jianghua, Zhou Hui, Jiang Jiang, Elashoff David, Wei Roger, Loo Joseph A, Wong David T
Salivary proteomics for oral cancer biomarker discovery
Clinical cancer research : an official journal of the American Association for Cancer Research,
2008; 14(19):
6246-52.
Denny Paul, Hagen Fred K, Hardt Markus, Liao Lujian, Yan Weihong, Arellanno Martha, Bassilian Sara, Bedi Gurrinder S, Boontheung Pinmannee, Cociorva Daniel, Delahunty Claire M, Denny Trish, Dunsmore Jason, Faull Kym F, Gilligan Joyce, Gonzalez-Begne Mireya, Halgand Frédéric, Hall Steven C, Han Xuemei, Henson Bradley, Hewel Johannes, Hu Shen, Jeffrey Sherry, Jiang Jiang, Loo Joseph A, Ogorzalek Loo Rachel R, Malamud Daniel, Melvin James E, Miroshnychenko Olga, Navazesh Mahvash, Niles Richard, Park Sung Kyu, Prakobphol Akraporn, Ramachandran Prasanna, Richert Megan, Robinson Sarah, Sondej Melissa, Souda Puneet, Sullivan Mark A, Takashima Jona, Than Shawn, Wang Jianghua, Whitelegge Julian P, Witkowska H Ewa, Wolinsky Lawrence, Xie Yongming, Xu Tao, Yu Weixia, Ytterberg Jimmy, Wong David T, Yates John R, Fisher Susan J
The proteomes of human parotid and submandibular/sublingual gland
salivas collected as the ductal secretions
Journal of proteome research,
2008; 7(5):
1994-2006.
Benchaar Sabrina A, Xie Yongming, Phillips Martin, Loo Rachel R Ogorzalek, Galkin Vitold E, Orlova Albina, Thevis Mario, Muhlrad Andras, Almo Steven C, Loo Joseph A, Egelman Edward H, Reisler Emil
Mapping the interaction of cofilin with subdomain 2 on actin
Biochemistry,
2007; 46(1):
225-33.
Hu S, Li Y, Wang J, Xie Y, Tjon K, Wolinsky L, Ogorzalek Loo RR, Loo JA, and Wong DT.
Human Saliva Proteome and Transcriptome,
J Dent Res,
2006; 85:
1129-1133.
Skaggs Brian J, Gorre Mercedes E, Ryvkin Ann, Burgess Michael R, Xie Yongming, Han Yun, Komisopoulou Evangelia, Brown Lauren M, Loo Joseph A, Landaw Elliot M, Sawyers Charles L, Graeber Thomas G
Phosphorylation of the ATP-binding loop directs oncogenicity of
drug-resistant BCR-ABL mutants
Proceedings of the National Academy of Sciences of the United States of America,
2006; 103(51):
19466-71.
Leikina Eugenia, Delanoe-Ayari Helene, Melikov Kamran, Cho Myoung-Soon, Chen Andrew, Waring Alan J, Wang Wei, Xie Yongming, Loo Joseph A, Lehrer Robert I, Chernomordik Leonid V
Carbohydrate-binding molecules inhibit viral fusion and entry by
crosslinking membrane glycoproteins
Nature immunology,
2005; 6(10):
995-1001.
Gomes Aldrin V, Zong Chenggong, Edmondson Ricky D, Berhane Beniam T, Wang Guang-Wu, Le Steven, Young Glen, Zhang Jun, Vondriska Thomas M, Whitelegge Julian P, Jones Richard C, Joshua Irving G, Thyparambil Sheeno, Pantaleon Dawn, Qiao Joe, Loo Joseph, Ping Peipei
The murine cardiac 26S proteasome: an organelle awaiting exploration
Annals of the New York Academy of Sciences,
2005; 1047(7):
197-207.
Hu Shen, Wang Jianghua, Meijer Jiska, Ieong Sonya, Xie Yongming, Yu Tianwei, Zhou Hui, Henry Sharon, Vissink Arjan, Pijpe Justin, Kallenberg Cees, Elashoff David, Loo Joseph A, Wong David T
Salivary proteomic and genomic biomarkers for primary Sjögren's
syndrome
Arthritis and rheumatism,
2007; 56(11):
3588-600.
Januszyk Kurt, Li Patrick Wai-Lun, Villareal Valerie, Branciforte Dan, Wu Haihong, Xie Yongming, Feigon Juli, Loo Joseph A, Martin Sandra L, Clubb Robert T
Identification and solution structure of a highly conserved C-terminal
domain within ORF1p required for retrotransposition of long
interspersed nuclear element-1
The Journal of biological chemistry,
2007; 282(34):
24893-904.
Allan Christopher M, Hill Shauna, Morvaridi Susan, Saiki Ryoichi, Johnson Jarrett S, Liau Wei-Siang, Hirano Kathleen, Kawashima Tadashi, Ji Ziming, Loo Joseph A, Shepherd Jennifer N, Clarke Catherine F
A conserved START domain coenzyme Q-binding polypeptide is required
for efficient Q biosynthesis, respiratory electron transport, and
antioxidant function in Saccharomyces cerevisiae
Biochimica et biophysica acta,
2013; 1831(4):
776-91.
Liu Bin, Yang Yonghui, Chernishof Vasili, Loo Rachel R Ogorzalek, Jang Hyunduk, Tahk Samuel, Yang Randy, Mink Sheldon, Shultz David, Bellone Clifford J, Loo Joseph A, Shuai Ke
Proinflammatory stimuli induce IKKalpha-mediated phosphorylation of
PIAS1 to restrict inflammation and immunity
Cell,
2007; 129(5):
903-14.
Hu Shen, Yu Tianwei, Xie Yongming, Yang Yanan, Li Yang, Zhou Xiaofeng, Tsung Stephanie, Loo Rachel R, Loo Joseph R, Wong David T
Discovery of oral fluid biomarkers for human oral cancer by mass
spectrometry
Cancer genomics & proteomics,
2007; 4(2):
55-64.
Leuchter Andrew F, Cook Ian A, Hamilton Steven P, Narr Katherine L, Toga Arthur, Hunter Aimee M, Faull Kym, Whitelegge Julian, Andrews Anne M, Loo Joseph, Way Baldwin, Nelson Stanley F, Horvath Steven, Lebowitz Barry D
Biomarkers to predict antidepressant response
Current psychiatry reports,
2010; 12(6):
553-62.
Mathivanan Suresh, Ahmed Mukhtar, Ahn Natalie G, Alexandre Hainard, Amanchy Ramars, Andrews Philip C, Bader Joel S, Balgley Brian M, Bantscheff Marcus, Bennett Keiryn L, Björling Erik, Blagoev Blagoy, Bose Ron, Brahmachari Samir K, Burlingame Alma S, Bustelo Xosé R, Cagney Gerard, Cantin Greg T, Cardasis Helene L, Celis Julio E, Chaerkady Raghothama, Chu Feixia, Cole Philip A, Costello Catherine E, Cotter Robert J, Crockett David, DeLany James P, De Marzo Angelo M, DeSouza Leroi V, Deutsch Eric W, Dransfield Eric, Drewes Gerard, Droit Arnaud, Dunn Michael J, Elenitoba-Johnson Kojo, Ewing Rob M, Van Eyk Jennifer, Faca Vitor, Falkner Jayson, Fang Xiangming, Fenselau Catherine, Figeys Daniel, Gagné Pierre, Gelfi Cecilia, Gevaert Kris, Gimble Jeffrey M, Gnad Florian, Goel Renu, Gromov Pavel, Hanash Samir M, Hancock William S, Harsha H C, Hart Gerald, Hays Faith, He Fuchu, Hebbar Prashantha, Helsens Kenny, Hermeking Heiko, Hide Winston, Hjernø Karin, Hochstrasser Denis F, Hofmann Oliver, Horn David M, Hruban Ralph H, Ibarrola Nieves, James Peter, Jensen Ole N, Jensen Pia Hønnerup, Jung Peter, Kandasamy Kumaran, Kheterpal Indu, Kikuno Reiko F, Korf Ulrike, Körner Roman, Kuster Bernhard, Kwon Min-Seok, Lee Hyoung-Joo, Lee Young-Jin, Lefevre Michael, Lehvaslaiho Minna, Lescuyer Pierre, Levander Fredrik, Lim Megan S, Löbke Christian, Loo Joseph A, Mann Matthias, Martens Lennart, Martinez-Heredia Juan, McComb Mark, McRedmond James, Mehrle Alexander, Menon Rajasree, Miller Christine A, Mischak Harald, Mohan S Sujatha, Mohmood Riaz, Molina Henrik, Moran Michael F, Morgan James D, Moritz Robert, Morzel Martine, Muddiman David C, Nalli Anuradha, Navarro J Daniel, Neubert Thomas A, Ohara Osamu, Oliva Rafael, Omenn Gilbert S, Oyama Masaaki, Paik Young-Ki, Pennington Kyla, Pepperkok Rainer, Periaswamy Balamurugan, Petricoin Emanuel F, Poirier Guy G, Prasad T S Keshava, Purvine Samuel O, Rahiman B Abdul, Ramachandran Prasanna, Ramachandra Y L, Rice Robert H, Rick Jens, Ronnholm Ragna H, Salonen Johanna, Sanchez Jean-Charles, Sayd Thierry, Seshi Beerelli, Shankari Kripa, Sheng Shi Jun, Shetty Vivekananda, Shivakumar K, Simpson Richard J, Sirdeshmukh Ravi, Siu K W Michael, Smith Jeffrey C, Smith Richard D, States David J, Sugano Sumio, Sullivan Matthew, Superti-Furga Giulio, Takatalo Maarit, Thongboonkerd Visith, Trinidad Jonathan C, Uhlen Mathias, Vandekerckhove Joël, Vasilescu Julian, Veenstra Timothy D, Vidal-Taboada José-Manuel, Vihinen Mauno, Wait Robin, Wang Xiaoyue, Wiemann Stefan, Wu Billy, Xu Tao, Yates John R, Zhong Jun, Zhou Ming, Zhu Yunping, Zurbig Petra, Pandey Akhilesh
Human Proteinpedia enables sharing of human protein data
Nature biotechnology,
2008; 26(2):
164-7.
Whitelegge Julian P, Zabrouskov Vlad, Halgand Frederic, Souda Puneet, Bassilian Sara, Yan Weihong, Wolinsky Larry, Loo Joseph A, Wong David T W, Faull Kym F
Protein-Sequence Polymorphisms and Post-translational Modifications in
Proteins from Human Saliva using Top-Down Fourier-transform Ion
Cyclotron Resonance Mass Spectrometry
International journal of mass spectrometry,
2007; 268(2-3):
190-197.