A selected list of publications:
Ji Andrew L, Rubin Adam J, Thrane Kim, Jiang Sizun, Reynolds David L, Meyers Robin M, Guo Margaret G, George Benson M, Mollbrink Annelie, Bergenstråhle Joseph, Larsson Ludvig, Bai Yunhao, Zhu Bokai, Bhaduri Aparna, Meyers Jordan M, Rovira-Clavé Xavier, Hollmig S Tyler, Aasi Sumaira Z, Nolan Garry P, Lundeberg Joakim, Khavari Paul A
Multimodal Analysis of Composition and Spatial Architecture in Human
Squamous Cell Carcinoma
Cell,
2020; 182(2):
497-514.e22.
Zhang Yue, Liu Guoping, Guo Teng, Liang Xiaoyi G, Du Heng, Yang Lin, Bhaduri Aparna, Li Xiaosu, Xu Zhejun, Zhang Zhuangzhi, Li Zhenmeiyu, He Miao, Tsyporin Jeremiah, Kriegstein Arnold R, Rubenstein John L, Yang Zhengang, Chen Bin
Cortical Neural Stem Cell Lineage Progression Is Regulated by
Extrinsic Signaling Molecule Sonic Hedgehog
Cell reports,
2020; 30(13):
4490-4504.e4.
Bhaduri Aparna, Andrews Madeline G, Mancia Leon Walter, Jung Diane, Shin David, Allen Denise, Jung Dana, Schmunk Galina, Haeussler Maximilian, Salma Jahan, Pollen Alex A, Nowakowski Tomasz J, Kriegstein Arnold R
Cell stress in cortical organoids impairs molecular subtype
specification
Nature,
2020; 578(7793):
142-148.
Satterstrom F Kyle, Kosmicki Jack A, Wang Jiebiao, Breen Michael S, De Rubeis Silvia, An Joon-Yong, Peng Minshi, Collins Ryan, Grove Jakob, Klei Lambertus, Stevens Christine, Reichert Jennifer, Mulhern Maureen S, Artomov Mykyta, Gerges Sherif, Sheppard Brooke, Xu Xinyi, Bhaduri Aparna, Norman Utku, Brand Harrison, Schwartz Grace, Nguyen Rachel, Guerrero Elizabeth E, Dias Caroline, Dias Caroline, Dias Caroline, Betancur Catalina, Cook Edwin H, Gallagher Louise, Gill Michael, Sutcliffe James S, Thurm Audrey, Zwick Michael E, Børglum Anders D, State Matthew W, Cicek A Ercument, Talkowski Michael E, Cutler David J, Devlin Bernie, Sanders Stephan J, Roeder Kathryn, Daly Mark J, Buxbaum Joseph D
Large-Scale Exome Sequencing Study Implicates Both Developmental and
Functional Changes in the Neurobiology of Autism
Cell,
2020; 180(3):
568-584.e23.
Bhaduri Aparna, Di Lullo Elizabeth, Jung Diane, Müller Sören, Crouch Elizabeth Erin, Espinosa Carmen Sandoval, Ozawa Tomoko, Alvarado Beatriz, Spatazza Julien, Cadwell Cathryn René, Wilkins Grace, Velmeshev Dmitry, Liu Siyuan John, Malatesta Martina, Andrews Madeline Gail, Mostajo-Radji Mohammed Andres, Huang Eric Jinsheng, Nowakowski Tomasz Jan, Lim Daniel Amos, Diaz Aaron, Raleigh David Ronan, Kriegstein Arnold Richard
Outer Radial Glia-like Cancer Stem Cells Contribute to Heterogeneity
of Glioblastoma
Cell stem cell,
2020; 26(1):
48-63.e6.
Schirmer Lucas, Velmeshev Dmitry, Holmqvist Staffan, Kaufmann Max, Werneburg Sebastian, Jung Diane, Vistnes Stephanie, Stockley John H, Young Adam, Steindel Maike, Tung Brian, Goyal Nitasha, Bhaduri Aparna, Mayer Simone, Engler Jan Broder, Bayraktar Omer A, Franklin Robin J M, Haeussler Maximilian, Reynolds Richard, Schafer Dorothy P, Friese Manuel A, Shiow Lawrence R, Kriegstein Arnold R, Rowitch David H
Neuronal vulnerability and multilineage diversity in multiple
sclerosis
Nature,
2019; 573(7772):
75-82.
Adorjan Istvan, Tyler Teadora, Bhaduri Aparna, Demharter Samuel, Finszter Cintia Klaudia, Bako Maria, Sebok Oliver Marcell, Nowakowski Tomasz J, Khodosevich Konstantin, Møllgård Kjeld, Kriegstein Arnold R, Shi Lei, Hoerder-Suabedissen Anna, Ansorge Olaf, Molnár Zoltán
Neuroserpin expression during human brain development and in adult
brain revealed by immunohistochemistry and single cell RNA sequencing
Journal of anatomy,
2019; 235(3):
543-554.
Velmeshev Dmitry, Schirmer Lucas, Jung Diane, Haeussler Maximilian, Perez Yonatan, Mayer Simone, Bhaduri Aparna, Goyal Nitasha, Rowitch David H, Kriegstein Arnold R
Single-cell genomics identifies cell type-specific molecular changes
in autism
Science (New York, N.Y.),
2019; 364(6441):
685-689.
Mayer Simone, Chen Jiadong, Velmeshev Dmitry, Mayer Andreas, Eze Ugomma C, Bhaduri Aparna, Cunha Carlos E, Jung Diane, Arjun Arpana, Li Emmy, Alvarado Beatriz, Wang Shaohui, Lovegren Nils, Gonzales Michael L, Szpankowski Lukasz, Leyrat Anne, West Jay A A, Panagiotakos Georgia, Alvarez-Buylla Arturo, Paredes Mercedes F, Nowakowski Tomasz J, Pollen Alex A, Kriegstein Arnold R
Multimodal Single-Cell Analysis Reveals Physiological Maturation in
the Developing Human Neocortex
Neuron,
2019; 102(1):
143-158.e7.
Pollen Alex A, Bhaduri Aparna, Andrews Madeline G, Nowakowski Tomasz J, Meyerson Olivia S, Mostajo-Radji Mohammed A, Di Lullo Elizabeth, Alvarado Beatriz, Bedolli Melanie, Dougherty Max L, Fiddes Ian T, Kronenberg Zev N, Shuga Joe, Leyrat Anne A, West Jay A, Bershteyn Marina, Lowe Craig B, Pavlovic Bryan J, Salama Sofie R, Haussler David, Eichler Evan E, Kriegstein Arnold R
Establishing Cerebral Organoids as Models of Human-Specific Brain
Evolution
Cell,
2019; 176(4):
743-756.e17.
Fiddes Ian T, Lodewijk Gerrald A, Mooring Meghan, Bosworth Colleen M, Ewing Adam D, Mantalas Gary L, Novak Adam M, van den Bout Anouk, Bishara Alex, Rosenkrantz Jimi L, Lorig-Roach Ryan, Field Andrew R, Haeussler Maximilian, Russo Lotte, Bhaduri Aparna, Nowakowski Tomasz J, Pollen Alex A, Dougherty Max L, Nuttle Xander, Addor Marie-Claude, Zwolinski Simon, Katzman Sol, Kriegstein Arnold, Eichler Evan E, Salama Sofie R, Jacobs Frank M J, Haussler David
Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical
Neurogenesis
Cell,
2018; 173(6):
1356-1369.e22.
Müller Sören, Kohanbash Gary, Liu S John, Alvarado Beatriz, Carrera Diego, Bhaduri Aparna, Watchmaker Payal B, Yagnik Garima, Di Lullo Elizabeth, Malatesta Martina, Amankulor Nduka M, Kriegstein Arnold R, Lim Daniel A, Aghi Manish, Okada Hideho, Diaz Aaron
Single-cell profiling of human gliomas reveals macrophage ontogeny as
a basis for regional differences in macrophage activation in the tumor
microenvironment
Genome biology,
2017; 18(1):
234.
Nowakowski Tomasz J, Bhaduri Aparna, Pollen Alex A, Alvarado Beatriz, Mostajo-Radji Mohammed A, Di Lullo Elizabeth, Haeussler Maximilian, Sandoval-Espinosa Carmen, Liu Siyuan John, Velmeshev Dmitry, Ounadjela Johain Ryad, Shuga Joe, Wang Xiaohui, Lim Daniel A, West Jay A, Leyrat Anne A, Kent W James, Kriegstein Arnold R
Spatiotemporal gene expression trajectories reveal developmental
hierarchies of the human cortex
Science (New York, N.Y.),
2017; 358(6368):
1318-1323.
Ozawa Michael G, Bhaduri Aparna, Chisholm Karen M, Baker Steven A, Ma Lisa, Zehnder James L, Luna-Fineman Sandra, Link Michael P, Merker Jason D, Arber Daniel A, Ohgami Robert S
A study of the mutational landscape of pediatric-type follicular
lymphoma and pediatric nodal marginal zone lymphoma
Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc,
2016; 29(10):
1212-20.
Siprashvili Zurab, Webster Dan E, Johnston Danielle, Shenoy Rajani M, Ungewickell Alexander J, Bhaduri Aparna, Flockhart Ross, Zarnegar Brian J, Che Yonglu, Meschi Francesca, Puglisi Joseph D, Khavari Paul A
The noncoding RNAs SNORD50A and SNORD50B bind K-Ras and are
recurrently deleted in human cancer
Nature genetics,
2016; 48(1):
53-8.
Ungewickell Alexander, Bhaduri Aparna, Rios Eon, Reuter Jason, Lee Carolyn S, Mah Angela, Zehnder Ashley, Ohgami Robert, Kulkarni Shashikant, Armstrong Randall, Weng Wen-Kai, Gratzinger Dita, Tavallaee Mahkam, Rook Alain, Snyder Michael, Kim Youn, Khavari Paul A
Genomic analysis of mycosis fungoides and Sézary syndrome identifies
recurrent alterations in TNFR2
Nature genetics,
2015; 47(9):
1056-60.
Lee Carolyn S, Bhaduri Aparna, Mah Angela, Johnson Whitney L, Ungewickell Alexander, Aros Cody J, Nguyen Christie B, Rios Eon J, Siprashvili Zurab, Straight Aaron, Kim Jinah, Aasi Sumaira Z, Khavari Paul A
Recurrent point mutations in the kinetochore gene KNSTRN in cutaneous
squamous cell carcinoma
Nature genetics,
2014; 46(10):
1060-2.
Lee Carolyn S, Ungewickell Alexander, Bhaduri Aparna, Qu Kun, Webster Dan E, Armstrong Randall, Weng Wen-Kai, Aros Cody J, Mah Angela, Chen Richard O, Lin Meihong, Sundram Uma, Chang Howard Y, Kretz Markus, Kim Youn H, Khavari Paul A
Transcriptome sequencing in Sezary syndrome identifies Sezary cell and
mycosis fungoides-associated lncRNAs and novel transcripts
Blood,
2012; 120(16):
3288-97.